[THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble https://github.com/broadinstitute/viral-phylo https://github.com/broadinstitute/viral-classify https://github.com/broadinstitute/viral-pipelines

Viral infection diagnostics using next-generation sequencing

Assembly and intrahost / low-frequency variant calling for viral samples

Viral genome assemble and characterisation

A reference guided assembler of highly variable viral genomes

Data portal and API for Center for Viral Systems Biology (CViSB) data

Deployment files related to https://github.com/broadinstitute/viral-ngs