chore(deps): update mcr.microsoft.com/devcontainers/python docker tag to v2 - autoclosed

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This PR contains the following updates:

Package	Type	Update	Change
mcr.microsoft.com/devcontainers/python	final	major	1-3.11-bullseye -> 2-3.11-bullseye

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[codecov]

❌ 3 Tests Failed:

Tests completed	Failed	Passed	Skipped
284	3	281	11

View the top 3 failed test(s) by shortest run time

tests.aignostics.application.cli_test::test_cli_run_list_verbose_limit_1

Stack Traces | 1.34s run time

runner = <typer.testing.CliRunner object at 0x7f81e97c7c50>

    def test_cli_run_list_verbose_limit_1(runner: CliRunner) -> None:
        """Check run list command runs successfully."""
        result = runner.invoke(cli, ["application", "run", "list", "--verbose", "--limit", "1"])
        assert result.exit_code == 0
        output = normalize_output(result.stdout)
        assert "Application Runs:" in output
>       assert "Item Status Counts:" in output
E       assert 'Item Status Counts:' in 'Application Runs:================================================================================Run ID: 869c90b2-5e18-4176-ad9f-5f72786d0376App Version: he-tme:v1.0.0-beta.5Status: RUNNINGTriggered at: 2025-09-03 20:53:41 UTCOrganization: org_4x6lxFWuZBjCBSEJError: Failed to get item statuses for run with ID \'869c90b2-5e18-4176-ad9f-5f72786d0376\': (500)Reason: Internal Server ErrorHTTP response headers: HTTPHeaderDict({\'date\': \'Wed, 03 Sep 2025 20:53:48 GMT\', \'server\': \'envoy\', \'x-trace-id\': \'60b8d24bfc208858fcc9ff4011eb8c71\', \'content-length\': \'80\', \'content-type\': \'application/json\', \'x-envoy-upstream-service-time\': \'32\', \'vary\': \'Accept-Encoding\'})HTTP response body: {"detail":"Internal Server Error","trace_id":"60b8d24bfc208858fcc9ff4011eb8c71"}--------------------------------------------------------------------------------Listed \'1\' run(s).'

.../aignostics/application/cli_test.py:263: AssertionError

tests.aignostics.application.cli_test::test_cli_run_submit_and_describe_and_cancel_and_download_and_delete

Stack Traces | 3.38s run time

runner = <typer.testing.CliRunner object at 0x7ff09c4715b0>
tmp_path = PosixPath('.../pytest-2/popen-gw2/test_cli_run_submit_and_descri0')

    def test_cli_run_submit_and_describe_and_cancel_and_download_and_delete(runner: CliRunner, tmp_path: Path) -> None:
        """Check run submit command runs successfully."""
        csv_content = "reference;checksum_base64_crc32c;resolution_mpp;width_px;height_px;staining_method;tissue;disease;"
        csv_content += "platform_bucket_url\n"
        csv_content += ";5onqtA==;0.26268186053789266;7447;7196;H&E;LUNG;LUNG_CANCER;gs:.../bucket/test"
        csv_path = tmp_path / "dummy.csv"
        csv_path.write_text(csv_content)
    
        result = runner.invoke(cli, ["application", "run", "submit", HETA_APPLICATION_ID, str(csv_path)])
        output = normalize_output(result.stdout)
        assert re.search(
            r"Submitted run with id '[0-9a-f-]+' for '",
            output,
        ), f"Output '{output}' doesn't match expected pattern"
        assert result.exit_code == 0
    
        # Extract run ID from the output
        run_id_match = re.search(r"Submitted run with id '([0-9a-f-]+)' for '", output)
        assert run_id_match, f"Failed to extract run ID from output '{output}'"
        run_id = run_id_match.group(1)
    
        # Test the describe command with the extracted run ID
        describe_result = runner.invoke(cli, ["application", "run", "describe", run_id])
>       assert describe_result.exit_code == 0
E       assert 1 == 0
E        +  where 1 = <Result SystemExit(1)>.exit_code

.../aignostics/application/cli_test.py:181: AssertionError

tests.aignostics.application.gui_test::test_gui_cli_to_run_cancel

Stack Traces | 13.4s run time

args = ()
kwargs = {'runner': <typer.testing.CliRunner object at 0x7fed372caf90>, 'silent_logging': None, 'user': <nicegui.testing.user.User object at 0x7fed387dafd0>}

    async def wrapped_test(*args, **kwargs):
        with Client.auto_index_client:
>           return await original_test(*args, **kwargs)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

..../test-3-13/lib/python3.13.../nicegui/testing/user_plugin.py:29: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
.../aignostics/application/gui_test.py:106: in test_gui_cli_to_run_cancel
    await assert_notified(user, "Application run cancelled!")
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

user = <nicegui.testing.user.User object at 0x7fed387dafd0>
expected_notification = 'Application run cancelled!', wait_seconds = 5

    async def assert_notified(user: User, expected_notification: str, wait_seconds: int = 5) -> str:
        """Check if the user receives a notification within the specified time.
    
        This utility function helps test GUI notifications by waiting for a specific
        notification message to appear in the user's notification messages.
    
        Args:
            user: The nicegui User instance for testing.
            expected_notification: The notification text to look for (partial match).
            wait_seconds: Maximum time to wait for the notification (default: 5).
    
        Returns:
            str: The oldest matching notification message found.
    
        Raises:
            pytest.fail: If no matching notification is found within the wait time.
        """
        for _ in range(wait_seconds):
            matching_messages = [msg for msg in user.notify.messages if expected_notification in msg]
            if matching_messages:
                return matching_messages[0]
            await sleep(1)
    
        recent_messages = user.notify.messages[-10:] if len(user.notify.messages) > 10 else user.notify.messages
        total_count = len(user.notify.messages)
>       pytest.fail(
            f"No notification containing '{expected_notification}' was found within {wait_seconds} seconds. "
            f"Total messages: {total_count}. Recent messages: {recent_messages}"
        )
E       Failed: No notification containing 'Application run cancelled!' was found within 5 seconds. Total messages: 2. Recent messages: ["Canceling application run with id '8face05f-5d6a-4c68-8ca0-9eb7b868ece4' ...", 'Failed to cancel application run: Failed to cancel application run with ID \'8face05f-5d6a-4c68-8ca0-9eb7b868ece4\': (500)\nReason: Internal Server Error\nHTTP response headers: HTTPHeaderDict({\'date\': \'Wed, 03 Sep 2025 20:53:52 GMT\', \'server\': \'envoy\', \'x-trace-id\': \'4cf29579d0a73027962167c431171cdc\', \'content-length\': \'80\', \'content-type\': \'application/json\', \'x-envoy-upstream-service-time\': \'435\', \'vary\': \'Accept-Encoding\'})\nHTTP response body: {"detail":"Internal Server Error","trace_id":"4cf29579d0a73027962167c431171cdc"}\n.']

tests/conftest.py:90: Failed

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[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

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