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@rwest rwest commented Jul 15, 2025

This branch was constant_reservoir_diffusion when it was built on top of the old for_rmg. I have rebased it onto the latest main and taken what care I could to resolve conflicts and remove redundancies appropriately. I have also then done a few iterations of interactive rebasing, to squash fixup commits, correct typos when they first happened, etc. So the commits won't look exactly like they used to, but should be a bit cleaner.

While rebasing I dropped the commits that were just fiddling with the CI, presuming that the CI on main is correct.

I think this incorporates everything in #247 (Marcus Kinetics) and #265, and probably #264.

mjohnson541 and others added 21 commits July 14, 2025 22:04
Removed an invalid field in a Marcus type reaction
in ORR.rms
Fixed array input format in ORR.rms
`cat` is a default Julia function for concatenating
arrays. As a precaution these are renamed to
`catalyst` to avoid conflicts
this interface creates diffusive fluxes between a given domain and a constant concentration reservoir

Some bugfixes by Su:
Fixed undefined variable S
Added missing "export" for ConstantReservoirDiffusion

Co-authored-by: Matt Johnson <mjohnson541@gmail.com>
Co-authored-by: Su Sun <sun.su@northeastern.edu>
fixup: fix assignment to dot addition .+=
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3 participants