fix find_parameter_sources notebook

Author: jonwzheng

ipython/find_parameter_sources_and_assign_uncertainties.ipynb

@@ -25,26 +25,6 @@
     "__Note__: The RMG-database version must match the version used to generate the model. RMG will attempt to recreate the kinetics estimate for each reaction and may fail if the database is different."
    ]
   },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": [
-    "## Run RMG job\n",
-    "This cell is used only when the user is interested in learning this module with the provided toy model, ./data/parse_source/input.py.\n",
-    "The user can speed up the model generation by commenting out the uncertainty block in ./data/parse_source/input.py."
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "scrolled": true
-   },
-   "outputs": [],
-   "source": [
-    "!python ../rmg.py ./data/parse_source/input.py"
-   ]
-  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -58,8 +38,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "chem_file = './data/parse_source/chemkin/chem_annotated.inp'\n",
-    "dict_file = './data/parse_source/chemkin/species_dictionary.txt'"
+    "chem_file = './data/parse_source/chem_annotated.inp'\n",
+    "dict_file = './data/parse_source/species_dictionary.txt'"
    ]
   },
   {
@@ -353,6 +333,13 @@
     "# See the kinetics correlated parameter partial uncertainties\n",
     "uncertainty.kinetic_input_uncertainties"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {